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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43583204_43590772_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43583204 - 43590772
Intron Length:
7569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATCT
Flanking Amino Acid:
CKEMKRKASEAELEAFENRL
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81
0.7
0.8
74.8
35.2
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
60.5
0.41
1.8
80.8
40.8

Associated Gene:

Gene:
NFXL1
Ensembl Gene ID:
ENSAPLG00000010735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044649
43582444 - 43621713
39270