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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4360000_4362568_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4360000 - 4362568
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTTTTCAATT
Flanking Amino Acid:
QYVDITRGKHERLVVAAEHC
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77.8
0.63
0.9
79.8
32.6
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
66.9
0.61
1.4
81.89
33.7

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616