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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43600547_43601349_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43600547 - 43601349
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
CKLSVLYIECLKLTSADLKE
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
74.4
34.2
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
88.7
0.87
0.6
84.5
23.4
Minor 5ss
39.8
-1.1
3.4
58.5
40.5
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
NFXL1
Ensembl Gene ID:
ENSAPLG00000010735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021169
43582444 - 43621713
39270
ENSAPLT00000011205
43424863 - 43621713
196851
ENSAPLT00000044649
43582444 - 43621713
39270
ENSAPLT00000036677
43582444 - 43621713
39270