About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43607846_43608125_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43607846 - 43608125
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCCTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCCTCCTTTACA
Flanking Amino Acid:
PCPPCQVPVPVECLGQHEVS
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85
0.79
0.7
79.2
26.4
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
70.5
0.64
1.6
75.21
42.3

Associated Gene:

Gene:
NFXL1
Ensembl Gene ID:
ENSAPLG00000010735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036677
43582444 - 43621713
39270
ENSAPLT00000021169
43582444 - 43621713
39270
ENSAPLT00000011205
43424863 - 43621713
196851
ENSAPLT00000044649
43582444 - 43621713
39270