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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43608218_43608957_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43608218 - 43608957
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
ACTTTGCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTGTATTCAATT
Flanking Amino Acid:
DEALVKQTGLHQSAGPWEQP
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.9
31.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
72.5
0.51
0.8
70
35.9
Minor 5ss
37.9
-1.4
2.7
47.4
36.1
Minor BPS
58.5
0.35
1.7
76.94
40.1

Associated Gene:

Gene:
NFXL1
Ensembl Gene ID:
ENSAPLG00000010735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036677
43582444 - 43621713
39270
ENSAPLT00000021169
43582444 - 43621713
39270
ENSAPLT00000011205
43424863 - 43621713
196851
ENSAPLT00000044649
43582444 - 43621713
39270