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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43609830_43612831_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43609830 - 43612831
Intron Length:
3002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
GTATTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATTT
Flanking Amino Acid:
NHKCPSGCHRGSCNPCPETV
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.8
0.6
0.9
74.9
39.6
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
53.1
0.18
1.7
70.85
40.8

Associated Gene:

Gene:
NFXL1
Ensembl Gene ID:
ENSAPLG00000010735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044649
43582444 - 43621713
39270
ENSAPLT00000036677
43582444 - 43621713
39270
ENSAPLT00000021169
43582444 - 43621713
39270
ENSAPLT00000011205
43424863 - 43621713
196851