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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43617458_43617587_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43617458 - 43617587
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACCTG
5'SS Class:
major
3'SS Sequence:
TGATTTCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTCATGATTT
Flanking Amino Acid:
QHTCENPCHAGNCQPCPRVS
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
56.9
47.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.4
0.48
1
66.4
39.7
Minor 5ss
39.4
-1.2
3.5
55.3
48.9
Minor BPS
52
0.14
2
76.82
39.5

Associated Gene:

Gene:
NFXL1
Ensembl Gene ID:
ENSAPLG00000010735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036677
43582444 - 43621713
39270
ENSAPLT00000021169
43582444 - 43621713
39270
ENSAPLT00000011205
43424863 - 43621713
196851
ENSAPLT00000044649
43582444 - 43621713
39270