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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43617750_43617914_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43617750 - 43617914
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGATTT
Flanking Amino Acid:
GHKCLLLCHPGPCPPCPKMV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.3
0.52
0.9
73
37.3
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
45.6
-0.2
2
68.77
41.6

Associated Gene:

Gene:
NFXL1
Ensembl Gene ID:
ENSAPLG00000010735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036677
43582444 - 43621713
39270
ENSAPLT00000021169
43582444 - 43621713
39270
ENSAPLT00000011205
43424863 - 43621713
196851
ENSAPLT00000044649
43582444 - 43621713
39270