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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43628712_43628845_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43628712 - 43628845
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGTACCTTACTT
Flanking Amino Acid:
VMYNWTMIIARACFDELQHD
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.2
30.5
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.8
78
29.6
Minor 5ss
31.6
-2.1
3.2
40.1
46.3
Minor BPS
60.7
0.41
1.7
74.45
42.2

Associated Gene:

Gene:
CNGA1
Ensembl Gene ID:
ENSAPLG00000010470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010910
43626314 - 43630942
4629