About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43628954_43629836_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43628954 - 43629836
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GCCTATCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CTCTACTTAAGT
Flanking Amino Acid:
DKSKKKENTEEKKKEIFIID
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
65.2
0.34
1
61.8
38.8
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
60.9
0.42
1.9
76.43
46

Associated Gene:

Gene:
CNGA1
Ensembl Gene ID:
ENSAPLG00000010470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010910
43626314 - 43630942
4629