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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43629939_43630431_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43629939 - 43630431
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
ATTTATTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TAGTCTGTAACA
Flanking Amino Acid:
YNINNNSNKDDKSENKKDGE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.2
0.66
0.8
77.9
35.5
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
60.4
0.32
2
72.07
40.3

Associated Gene:

Gene:
CNGA1
Ensembl Gene ID:
ENSAPLG00000010470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010910
43626314 - 43630942
4629