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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43639808_43640361_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43639808 - 43640361
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CTTTCTTCTACA
Flanking Amino Acid:
EWLWWAGLLSMGLGEAANFA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
75.1
35.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
89
0.88
0.6
83.8
24.4
Minor 5ss
36.2
-1.6
2.9
44.9
36.9
Minor BPS
56.7
0.2
1.9
71.31
40.9

Associated Gene:

Gene:
NIPAL1
Ensembl Gene ID:
ENSAPLG00000026168
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027156
43638132 - 43643463
5332