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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43641186_43642181_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43641186 - 43642181
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTAGG
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATATTTAATC
Flanking Amino Acid:
DEMEIKLQDPVFVAFAVLLT
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
65.3
46
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.1
0.88
0.6
84.2
24
Minor 5ss
36.6
-1.5
2.5
43
43.9
Minor BPS
63.9
0.42
1.4
69.01
36.2

Associated Gene:

Gene:
NIPAL1
Ensembl Gene ID:
ENSAPLG00000026168
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027156
43638132 - 43643463
5332