Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43653542_43654116_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43653542 - 43654116

Intron Length:

575

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTA|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

TCCTTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAA

U12 Branch Point Sequence:

TTAGCCCAGATT

Flanking Amino Acid:

ERNRFIHRDLAARNCLVNAE

Intron Amino Acid Position:

392

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

76.2

32.6

Major BPS

0.79

0.8

83.7

25.7

Major PPT

82.8

0.74

0.7

76.2

32.4

Minor 5ss

37.9

-1.4

2.7

45.5

37.1

Minor BPS

46.3

-0.2

2.1

68.22

43.1

Associated Gene:

Gene:

TXK

Ensembl Gene ID:

ENSAPLG00000010285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019935

43648448 - 43663415

14968

ENSAPLT00000010734

43648448 - 43668746

20299