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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43671628_43673523_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43671628 - 43673523
Intron Length:
1896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCTTTCTGATCA
Flanking Amino Acid:
YEVMMMCWQEKPEGRPTFED
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.7
0.8
0.7
84.6
30.3
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
53.3
0.1
1.7
64.5
41.8

Associated Gene:

Gene:
TEC
Ensembl Gene ID:
ENSAPLG00000009593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010079
43671550 - 43701832
30283
ENSAPLT00000046160
43671550 - 43709126
37577
ENSAPLT00000033806
43670513 - 43708518
38006