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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43673682_43674029_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43673682 - 43674029
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCTTAATG
Flanking Amino Acid:
FSSKSDVWSFGVLMWEVFTE
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.8
44.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83.1
0.74
0.7
81.8
29.8
Minor 5ss
34.2
-1.8
3.2
49.3
46.3
Minor BPS
78.8
0.77
1.2
77.24
34

Associated Gene:

Gene:
TEC
Ensembl Gene ID:
ENSAPLG00000009593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046160
43671550 - 43709126
37577
ENSAPLT00000033806
43670513 - 43708518
38006
ENSAPLT00000010079
43671550 - 43701832
30283