About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43675676_43675847_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43675676 - 43675847
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TCAACCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGATTTCAACC
Flanking Amino Acid:
EDFIEEAKVMMKLTHPKLVQ
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
35.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.9
0.6
0.9
73.2
36.8
Minor 5ss
37.5
-1.4
2.9
48.1
41.3
Minor BPS
52.3
0.05
1.5
61.18
38.3

Associated Gene:

Gene:
TEC
Ensembl Gene ID:
ENSAPLG00000009593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010079
43671550 - 43701832
30283
ENSAPLT00000046160
43671550 - 43709126
37577
ENSAPLT00000033806
43670513 - 43708518
38006