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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43678610_43679373_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43678610 - 43679373
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTATTATTATAT
Flanking Amino Acid:
YTVSLYTKFGGEGSSGIRHY
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
48.1
-0
1.9
68.11
42

Associated Gene:

Gene:
TEC
Ensembl Gene ID:
ENSAPLG00000009593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046160
43671550 - 43709126
37577
ENSAPLT00000033806
43670513 - 43708518
38006
ENSAPLT00000010079
43671550 - 43701832
30283