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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43679675_43681772_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43679675 - 43681772
Intron Length:
2098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TACTATGTAATA
Flanking Amino Acid:
IHWWKARNKYGWYSRNLNRS
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.7
44.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
77.6
0.62
0.9
70.5
39.9
Minor 5ss
42.6
-0.8
2.9
49.5
46.5
Minor BPS
47.7
-0.1
2.1
60.8
39.9

Associated Gene:

Gene:
TEC
Ensembl Gene ID:
ENSAPLG00000009593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010079
43671550 - 43701832
30283