About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4368248_4384785_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4368248 - 4384785
Intron Length:
16538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTTTCG
5'SS Class:
major
3'SS Sequence:
GTTATTTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAGTAATTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61.2
40.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73
0.52
1
65.9
45.2
Minor 5ss
33.7
-1.9
3
41.3
45.2
Minor BPS
54.4
0.22
1.8
70.15
40.4

Associated Gene:

Gene:
AIMP1
Ensembl Gene ID:
ENSAPLG00000006022
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006253
4367621 - 4400577
32957