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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43683868_43685426_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43683868 - 43685426
Intron Length:
1559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCTTTTTAAAT
Flanking Amino Acid:
RDQWVRNLKEGIKNNSNIMV
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.64
0.8
74.2
30.7
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
66.4
0.59
1.4
75.95
41.3

Associated Gene:

Gene:
TEC
Ensembl Gene ID:
ENSAPLG00000009593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010079
43671550 - 43701832
30283
ENSAPLT00000046160
43671550 - 43709126
37577
ENSAPLT00000033806
43670513 - 43708518
38006