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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43685509_43686535_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43685509 - 43686535
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAA
Flanking Amino Acid:
IPCQNKYPFQVVYDANTLYI
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
71.8
0.68
1.3
77.35
32.8

Associated Gene:

Gene:
TEC
Ensembl Gene ID:
ENSAPLG00000009593
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046160
43671550 - 43709126
37577
ENSAPLT00000033806
43670513 - 43708518
38006
ENSAPLT00000010079
43671550 - 43701832
30283