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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43756877_43759129_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43756877 - 43759129
Intron Length:
2253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TGTTGTTTCATA
Flanking Amino Acid:
DLQTSNVKSEEKLRRSLPNL
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
77.4
37.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
82
0.72
0.9
77.3
36.1
Minor 5ss
35.3
-1.7
3
50
45.8
Minor BPS
49.5
-0
2.1
67.25
40.1

Associated Gene:

Gene:
SLAIN2
Ensembl Gene ID:
ENSAPLG00000005671
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030349
43736935 - 43760378
23444
ENSAPLT00000005880
43736935 - 43770373
33439