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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43759268_43768499_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43759268 - 43768499
Intron Length:
9232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATTT
Flanking Amino Acid:
IPRIQPQASAIPSSSKFRSP
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
SLAIN2
Ensembl Gene ID:
ENSAPLG00000005671
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005880
43736935 - 43770373
33439