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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43768819_43770306_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43768819 - 43770306
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTATGAAGC
Flanking Amino Acid:
PRSKLAQPVRRSLPTPKTYG
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.8
0.67
0.8
78.1
35
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
46.7
-0.2
2
63.76
41.8

Associated Gene:

Gene:
SLAIN2
Ensembl Gene ID:
ENSAPLG00000005671
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005880
43736935 - 43770373
33439