About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43784341_43784431_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43784341 - 43784431
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
CTGGCGGTGATC
Flanking Amino Acid:
SVLVDGDMNLSIIMTASSTL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
78.1
0.63
0.7
72.5
25.6
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
38.6
-0.9
2.5
48.12
43.1

Associated Gene:

Gene:
SLC10A4
Ensembl Gene ID:
ENSAPLG00000001667
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001660
43783570 - 43785648
2079