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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43794239_43795624_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43794239 - 43795624
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
GCATTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAAACTAGAAAA
Flanking Amino Acid:
QVNTIKKEAEVINMSEELAV
Intron Amino Acid Position:
2864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
79
0.72
1
78.4
31.2
Major PPT
71.8
0.49
1
69.4
41.5
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
44.4
-0.4
1.7
54.11
37

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600