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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43799999_43804420_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43799999 - 43804420
Intron Length:
4422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTGTTTATGG
Flanking Amino Acid:
YNVKREAAEQWLDDCKRTFG
Intron Amino Acid Position:
2802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
45
-0.5
2.3
54.06
47.5

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600