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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43811198_43815815_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43811198 - 43815815
Intron Length:
4618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
GTTTGATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCTGTTTGATT
Flanking Amino Acid:
LDNSSNQLPEEGSSAVRDEQ
Intron Amino Acid Position:
2565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
76
0.58
0.9
69
41
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
60.3
0.4
1.8
78.04
39.4

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600