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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43815984_43816869_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43815984 - 43816869
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTTGATG
Flanking Amino Acid:
ASQILSRSQMLNSDSAIDET
Intron Amino Acid Position:
2509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.8
0.85
0.6
88.4
21.1
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
70.4
0.5
1.2
70.75
36.8

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600