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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43821606_43823735_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43821606 - 43823735
Intron Length:
2130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TGTTTGGTGATT
Flanking Amino Acid:
IIKVIGKYVQSPYWKEALNI
Intron Amino Acid Position:
2237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
80
0.67
0.8
78.2
35.7
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
44.9
-0.3
2.6
70.56
41.2

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600