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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43823877_43824883_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43823877 - 43824883
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
TFNLVTYLAELLEKGLSSMQ
Intron Amino Acid Position:
2190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600