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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43826189_43826822_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43826189 - 43826822
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTA
5'SS Class:
major
3'SS Sequence:
TGTATGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GCTCATATAACT
Flanking Amino Acid:
HALVDPSQLAGFPLNILCLL
Intron Amino Acid Position:
2100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
75.2
37.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
68.3
0.41
1
65.9
45.2
Minor 5ss
48.2
-0.2
2.8
67.3
43.8
Minor BPS
49.3
0.03
1.8
68.33
42

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600