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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43827431_43828158_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43827431 - 43828158
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTAAACT
Flanking Amino Acid:
KHYDLLSALSQTSYHDSVMG
Intron Amino Acid Position:
1897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
78.9
0.99
1.5
95.32
31.5

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600