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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43829151_43829665_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43829151 - 43829665
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTTGCTTTCATA
Flanking Amino Acid:
VVAIFKQSSSVGFQLEHRLS
Intron Amino Acid Position:
1802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
80.5
0.69
0.8
76.3
32.4
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
60.2
0.31
1.8
74.34
38.4

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600