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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43829788_43830521_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43829788 - 43830521
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATAT
Flanking Amino Acid:
VKTLIEFITSRKRGPLWNHE
Intron Amino Acid Position:
1761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.8
82.2
34.4
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
58.4
0.34
1.7
76.23
40.9

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600