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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43830727_43832334_R

Intron Information:

Intron Rank:
38
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43830727 - 43832334
Intron Length:
1608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
QTTHLDYTFTAGVHDFIPDY
Intron Amino Acid Position:
1693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.6
93.4
22.5
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600