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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43833254_43833629_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43833254 - 43833629
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTTATTCTAACA
Flanking Amino Acid:
ETSPPGMSLHRCNIAVILLT
Intron Amino Acid Position:
1596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
76.2
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
40
-1.1
3.3
58.7
45.8
Minor BPS
56.1
0.19
1.7
69.24
36.7

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600