About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43833781_43835836_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43833781 - 43835836
Intron Length:
2056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATATTT
5'SS Class:
major
3'SS Sequence:
TCTGTTGTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCTGGTTTAATT
Flanking Amino Acid:
SSGGSYEEEKSDSMPLYSNW
Intron Amino Acid Position:
1546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
77.2
31.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
68.8
0.42
1
69.2
41.8
Minor 5ss
45.7
-0.5
3.1
65.8
39.4
Minor BPS
58
0.33
1.9
74.65
43.4

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600