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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43835950_43837708_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43835950 - 43837708
Intron Length:
1759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GCTGTTTTATTT
Flanking Amino Acid:
SKHIKDSIEENYVHLDIYSG
Intron Amino Acid Position:
1508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
49.1
0.01
1.7
63.03
42.4

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600