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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43837794_43839141_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43837794 - 43839141
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CCATAATTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTCCATAATT
Flanking Amino Acid:
SSYKIPSVTSGTTSSSNTMV
Intron Amino Acid Position:
1480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.1
0.32
0.9
57.4
37.1
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
74.4
0.84
1.6
88.96
35.9

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600