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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43840558_43841393_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43840558 - 43841393
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGATATTTATTT
Flanking Amino Acid:
LNNLMYMTAKYGDEVAWSEI
Intron Amino Acid Position:
1377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
49.2
0.02
1.7
64.98
39.6

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600