About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43841654_43842890_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43841654 - 43842890
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AATTTTTGAATA
Flanking Amino Acid:
YPELTLAIFSEVSQRIQTAH
Intron Amino Acid Position:
1290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
73.1
0.52
1
67.7
41.6
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
60.9
0.34
1.3
67.28
32.7

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600