About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43844235_43844477_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43844235 - 43844477
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATAG
5'SS Class:
major
3'SS Sequence:
CATTTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTC
Flanking Amino Acid:
FKAIASVFQNRDYQCDTVTL
Intron Amino Acid Position:
1200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
61.6
39.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.5
0.6
0.8
69.8
36.3
Minor 5ss
36.3
-1.6
3.2
47.2
48.1
Minor BPS
61.2
0.33
1.7
74.93
36

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600