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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43847366_43848403_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43847366 - 43848403
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTGTTGAATA
Flanking Amino Acid:
IKEALERRPENMKRRRRRDI
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
36.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.1
0.5
1
69.9
40.3
Minor 5ss
32.1
-2
3.1
41.4
44.9
Minor BPS
60.4
0.32
1.8
75.76
36

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600