About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43850021_43851479_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43850021 - 43851479
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATTT
Flanking Amino Acid:
PDSGYSIDSRIIGIPSPSSL
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
66.1
40.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.1
0.72
0.7
81.3
30.7
Minor 5ss
42.7
-0.8
3.1
55.2
43.1
Minor BPS
53.6
0.19
1.7
70.13
42.3

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600