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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43854356_43855353_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43854356 - 43855353
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTTTCTAAACA
Flanking Amino Acid:
SRTDLIELLARLTIHMDEEL
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
80.8
0.69
0.9
78.3
34
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
76.3
0.82
1.6
86.69
32.1

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600