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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43855462_43855706_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43855462 - 43855706
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTACGTATA
5'SS Class:
major
3'SS Sequence:
ACTGGTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGATTATAAACT
Flanking Amino Acid:
MSNKEPEDMITGERKPKIDL
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
78.2
38.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.1
0.5
0.9
65.7
40.4
Minor 5ss
39.6
-1.2
3
49.8
40.1
Minor BPS
53.9
0.2
1.9
74.56
41.8

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600