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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43856674_43857287_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43856674 - 43857287
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTGCTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGGTTTTTACTT
Flanking Amino Acid:
SPKTFTINPERMNIGLRVFL
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.8
38.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.8
0.56
0.9
69.1
37
Minor 5ss
33.9
-1.8
2.9
44.3
43
Minor BPS
57.5
0.31
1.6
71.32
40.7

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600