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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4385789_4388231_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4385789 - 4388231
Intron Length:
2443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGAAA
5'SS Class:
major
3'SS Sequence:
TTTTCATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATTT
Flanking Amino Acid:
ELIQAEIRNGVKQIAVPPGT
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.9
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.9
27.3
Minor 5ss
24.7
-2.9
3.1
29.4
43.5
Minor BPS
51.2
0.11
1.7
72.11
39.6

Associated Gene:

Gene:
AIMP1
Ensembl Gene ID:
ENSAPLG00000006022
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006253
4367621 - 4400577
32957